ADHOC: Volume fsck use a time cutoff param (#3626)

* ADHOC: cut off volumn fsck

* more

* fix typo

* add test

* modify name

* fix comment

* fix comments

* nit

* fix typo

* Update weed/shell/command_volume_fsck.go

Co-authored-by: root <root@HQ-10MSTD3EY.roblox.local>
Co-authored-by: Chris Lu <chrislusf@users.noreply.github.com>

weed/shell/command_volume_fsck.go

@@ -2,7 +2,9 @@ package shell
 
 import (
 	"bufio"
+	"bytes"
 	"context"
+	"errors"
 	"flag"
 	"fmt"
 	"github.com/seaweedfs/seaweedfs/weed/filer"
@@ -11,6 +13,7 @@ import (
 	"github.com/seaweedfs/seaweedfs/weed/pb/filer_pb"
 	"github.com/seaweedfs/seaweedfs/weed/pb/master_pb"
 	"github.com/seaweedfs/seaweedfs/weed/pb/volume_server_pb"
+	"github.com/seaweedfs/seaweedfs/weed/storage/idx"
 	"github.com/seaweedfs/seaweedfs/weed/storage/needle"
 	"github.com/seaweedfs/seaweedfs/weed/storage/needle_map"
 	"github.com/seaweedfs/seaweedfs/weed/storage/types"
@@ -72,6 +75,7 @@ func (c *commandVolumeFsck) Do(args []string, commandEnv *CommandEnv, writer io.
 	c.forcePurging = fsckCommand.Bool("forcePurging", false, "delete missing data from volumes in one replica used together with applyPurging")
 	purgeAbsent := fsckCommand.Bool("reallyDeleteFilerEntries", false, "<expert only!> delete missing file entries from filer if the corresponding volume is missing for any reason, please ensure all still existing/expected volumes are connected! used together with findMissingChunksInFiler")
 	tempPath := fsckCommand.String("tempPath", path.Join(os.TempDir()), "path for temporary idx files")
+	cutoffTimeAgo := fsckCommand.Duration("cutoffTimeAgo", 5*time.Minute, "only include entries  on volume servers before this cutoff time to check orphan chunks")
 
 	if err = fsckCommand.Parse(args); err != nil {
 		return nil
@@ -126,7 +130,8 @@ func (c *commandVolumeFsck) Do(args []string, commandEnv *CommandEnv, writer io.
 				delete(volumeIdToVInfo, volumeId)
 				continue
 			}
-			err = c.collectOneVolumeFileIds(tempFolder, dataNodeId, volumeId, vinfo, *verbose, writer)
+			cutoffFrom := time.Now().Add(-*cutoffTimeAgo).UnixNano()
+			err = c.collectOneVolumeFileIds(tempFolder, dataNodeId, volumeId, vinfo, *verbose, writer, uint64(cutoffFrom))
 			if err != nil {
 				return fmt.Errorf("failed to collect file ids from volume %d on %s: %v", volumeId, vinfo.server, err)
 			}
@@ -351,7 +356,7 @@ func (c *commandVolumeFsck) findExtraChunksInVolumeServers(dataNodeVolumeIdToVIn
 	return nil
 }
 
-func (c *commandVolumeFsck) collectOneVolumeFileIds(tempFolder string, dataNodeId string, volumeId uint32, vinfo VInfo, verbose bool, writer io.Writer) error {
+func (c *commandVolumeFsck) collectOneVolumeFileIds(tempFolder string, dataNodeId string, volumeId uint32, vinfo VInfo, verbose bool, writer io.Writer, cutoffFrom uint64) error {
 
 	if verbose {
 		fmt.Fprintf(writer, "collecting volume %d file ids from %s ...\n", volumeId, vinfo.server)
@@ -377,13 +382,42 @@ func (c *commandVolumeFsck) collectOneVolumeFileIds(tempFolder string, dataNodeI
 			return fmt.Errorf("failed to start copying volume %d%s: %v", volumeId, ext, err)
 		}
 
-		err = writeToFile(copyFileClient, getVolumeFileIdFile(tempFolder, dataNodeId, volumeId))
+		var buf bytes.Buffer
+		for {
+			resp, err := copyFileClient.Recv()
+			if errors.Is(err, io.EOF) {
+				break
+			}
+			if err != nil {
+				return err
+			}
+			buf.Write(resp.FileContent)
+		}
+		if vinfo.isReadOnly == false {
+			index, err := idx.FirstInvalidIndex(buf.Bytes(), func(key types.NeedleId, offset types.Offset, size types.Size) (bool, error) {
+				resp, err := volumeServerClient.ReadNeedleMeta(context.Background(), &volume_server_pb.ReadNeedleMetaRequest{
+					VolumeId: volumeId,
+					NeedleId: uint64(key),
+					Offset:   offset.ToActualOffset(),
+					Size:     int32(size),
+				})
+				if err != nil {
+					return false, fmt.Errorf("to read needle meta with id %d  from volume %d with error %v", key, volumeId, err)
+				}
+				return resp.LastModified <= cutoffFrom, nil
+			})
+			if err != nil {
+				fmt.Fprintf(writer, "Failed to search for last vilad index on volume %d with error %v", volumeId, err)
+			}
+			buf.Truncate(index * types.NeedleMapEntrySize)
+		}
+		idxFilename := getVolumeFileIdFile(tempFolder, dataNodeId, volumeId)
+		err = writeToFile(buf.Bytes(), idxFilename)
 		if err != nil {
 			return fmt.Errorf("failed to copy %d%s from %s: %v", volumeId, ext, vinfo.server, err)
 		}
 
 		return nil
-
 	})
 
 }
@@ -673,7 +707,7 @@ func getFilerFileIdFile(tempFolder string, vid uint32) string {
 	return filepath.Join(tempFolder, fmt.Sprintf("%d.fid", vid))
 }
 
-func writeToFile(client volume_server_pb.VolumeServer_CopyFileClient, fileName string) error {
+func writeToFile(bytes []byte, fileName string) error {
 	flags := os.O_WRONLY | os.O_CREATE | os.O_TRUNC
 	dst, err := os.OpenFile(fileName, flags, 0644)
 	if err != nil {
@@ -681,15 +715,6 @@ func writeToFile(client volume_server_pb.VolumeServer_CopyFileClient, fileName s
 	}
 	defer dst.Close()
 
-	for {
-		resp, receiveErr := client.Recv()
-		if receiveErr == io.EOF {
-			break
-		}
-		if receiveErr != nil {
-			return fmt.Errorf("receiving %s: %v", fileName, receiveErr)
-		}
-		dst.Write(resp.FileContent)
-	}
+	dst.Write(bytes)
 	return nil
 }

weed/storage/idx/binary_search.go

@@ -0,0 +1,29 @@
+package idx
+
+import (
+	"github.com/seaweedfs/seaweedfs/weed/storage/types"
+)
+
+// firstInvalidIndex find the first index the failed lessThanOrEqualToFn function's requirement.
+func FirstInvalidIndex(bytes []byte, lessThanOrEqualToFn func(key types.NeedleId, offset types.Offset, size types.Size) (bool, error)) (int, error) {
+	left, right := 0, len(bytes)/types.NeedleMapEntrySize-1
+	index := right + 1
+	for left <= right {
+		mid := left + (right-left)>>1
+		loc := mid * types.NeedleMapEntrySize
+		key := types.BytesToNeedleId(bytes[loc : loc+types.NeedleIdSize])
+		offset := types.BytesToOffset(bytes[loc+types.NeedleIdSize : loc+types.NeedleIdSize+types.OffsetSize])
+		size := types.BytesToSize(bytes[loc+types.NeedleIdSize+types.OffsetSize : loc+types.NeedleIdSize+types.OffsetSize+types.SizeSize])
+		res, err := lessThanOrEqualToFn(key, offset, size)
+		if err != nil {
+			return -1, err
+		}
+		if res {
+			left = mid + 1
+		} else {
+			index = mid
+			right = mid - 1
+		}
+	}
+	return index, nil
+}

weed/storage/idx_binary_search_test.go

@@ -0,0 +1,57 @@
+package storage
+
+import (
+	"github.com/seaweedfs/seaweedfs/weed/storage/idx"
+	"github.com/seaweedfs/seaweedfs/weed/storage/needle"
+	"github.com/seaweedfs/seaweedfs/weed/storage/super_block"
+	"github.com/seaweedfs/seaweedfs/weed/storage/types"
+	"github.com/stretchr/testify/assert"
+	"os"
+	"testing"
+)
+
+func TestFirstInvalidIndex(t *testing.T) {
+	dir := t.TempDir()
+
+	v, err := NewVolume(dir, dir, "", 1, NeedleMapInMemory, &super_block.ReplicaPlacement{}, &needle.TTL{}, 0, 0)
+	if err != nil {
+		t.Fatalf("volume creation: %v", err)
+	}
+	type WriteInfo struct {
+		offset int64
+		size   int32
+	}
+	// initialize 20 needles then update first 10 needles
+	for i := 1; i <= 30; i++ {
+		n := newRandomNeedle(uint64(i))
+		n.Flags = 0x08
+		_, _, _, err := v.writeNeedle2(n, true, false)
+		if err != nil {
+			t.Fatalf("write needle %d: %v", i, err)
+		}
+	}
+	b, err := os.ReadFile(v.IndexFileName() + ".idx")
+	// base case every record is valid -> nothing is filtered
+	index, err := idx.FirstInvalidIndex(b, func(key types.NeedleId, offset types.Offset, size types.Size) (bool, error) {
+		return true, nil
+	})
+	if err != nil {
+		t.Fatalf("failed to complete binary search %v", err)
+	}
+	assert.Equal(t, 30, index, "when every record is valid nothing should be filtered from binary search")
+	index, err = idx.FirstInvalidIndex(b, func(key types.NeedleId, offset types.Offset, size types.Size) (bool, error) {
+		return false, nil
+	})
+	assert.Equal(t, 0, index, "when every record is invalid everything should be filtered from binary search")
+	index, err = idx.FirstInvalidIndex(b, func(key types.NeedleId, offset types.Offset, size types.Size) (bool, error) {
+		return key < 20, nil
+	})
+	// needle key range from 1 to 30 so < 20 means 19 keys are valid and cutoff the bytes at 19 * 16 = 304
+	assert.Equal(t, 19, index, "when every record is invalid everything should be filtered from binary search")
+
+	index, err = idx.FirstInvalidIndex(b, func(key types.NeedleId, offset types.Offset, size types.Size) (bool, error) {
+		return key <= 1, nil
+	})
+	// needle key range from 1 to 30 so <=1 1 means 1 key is valid and cutoff the bytes at 1 * 16 = 16
+	assert.Equal(t, 1, index, "when every record is invalid everything should be filtered from binary search")
+}