Defaulted back to the basic pathogen infect. Updated the updater to init git submodules as needed.

home/.vimrc

@@ -1,5 +1,5 @@
 " Call pathogen if it's installed
-call pathogen#infect("bundle/{}")
+call pathogen#infect()
 
 """"
 " General Settings

scripts/.update_dotfiles.sh

@@ -31,6 +31,7 @@ elif [ $LOCAL = $BASE ]; then
     echo "Updating dotfiles in: $PWD"
     git checkout master
     git pull
+    git submodule init
     git submodule update
 
     #Since we updated, we should execute the bootstrapper again.