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551 lines
16 KiB
551 lines
16 KiB
package iceberg
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import (
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"bytes"
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"context"
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"encoding/json"
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"errors"
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"fmt"
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"io"
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"path"
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"sort"
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"strings"
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"time"
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"github.com/apache/iceberg-go"
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"github.com/apache/iceberg-go/table"
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"github.com/parquet-go/parquet-go"
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"github.com/seaweedfs/seaweedfs/weed/glog"
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"github.com/seaweedfs/seaweedfs/weed/pb/filer_pb"
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"github.com/seaweedfs/seaweedfs/weed/s3api/s3tables"
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"google.golang.org/grpc/codes"
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"google.golang.org/grpc/status"
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)
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// compactionBin groups small data files from the same partition for merging.
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type compactionBin struct {
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PartitionKey string
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Partition map[int]any
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Entries []iceberg.ManifestEntry
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TotalSize int64
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}
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// compactDataFiles reads manifests to find small Parquet data files, groups
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// them by partition, reads and merges them using parquet-go, and commits new
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// manifest entries.
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func (h *Handler) compactDataFiles(
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ctx context.Context,
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filerClient filer_pb.SeaweedFilerClient,
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bucketName, tablePath string,
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config Config,
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) (string, error) {
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meta, metadataFileName, err := loadCurrentMetadata(ctx, filerClient, bucketName, tablePath)
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if err != nil {
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return "", fmt.Errorf("load metadata: %w", err)
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}
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currentSnap := meta.CurrentSnapshot()
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if currentSnap == nil || currentSnap.ManifestList == "" {
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return "no current snapshot", nil
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}
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// Read manifest list
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manifestListData, err := loadFileByIcebergPath(ctx, filerClient, bucketName, tablePath, currentSnap.ManifestList)
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if err != nil {
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return "", fmt.Errorf("read manifest list: %w", err)
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}
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manifests, err := iceberg.ReadManifestList(bytes.NewReader(manifestListData))
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if err != nil {
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return "", fmt.Errorf("parse manifest list: %w", err)
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}
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// Abort if delete manifests exist — the compactor does not apply deletes,
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// so carrying them through could produce incorrect results.
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// Also detect multiple partition specs — the compactor writes a single
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// manifest under the current spec which is invalid for spec-evolved tables.
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specIDs := make(map[int32]struct{})
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for _, mf := range manifests {
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if mf.ManifestContent() != iceberg.ManifestContentData {
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return "compaction skipped: delete manifests present (not yet supported)", nil
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}
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specIDs[mf.PartitionSpecID()] = struct{}{}
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}
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if len(specIDs) > 1 {
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return "compaction skipped: multiple partition specs present (not yet supported)", nil
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}
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// Collect data file entries from data manifests
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var allEntries []iceberg.ManifestEntry
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for _, mf := range manifests {
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manifestData, err := loadFileByIcebergPath(ctx, filerClient, bucketName, tablePath, mf.FilePath())
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if err != nil {
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return "", fmt.Errorf("read manifest %s: %w", mf.FilePath(), err)
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}
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entries, err := iceberg.ReadManifest(mf, bytes.NewReader(manifestData), true)
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if err != nil {
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return "", fmt.Errorf("parse manifest %s: %w", mf.FilePath(), err)
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}
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allEntries = append(allEntries, entries...)
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}
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// Build compaction bins: group small files by partition
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// MinInputFiles is clamped by ParseConfig to [2, ...] so int conversion is safe.
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bins := buildCompactionBins(allEntries, config.TargetFileSizeBytes, int(config.MinInputFiles))
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if len(bins) == 0 {
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return "no files eligible for compaction", nil
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}
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spec := meta.PartitionSpec()
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schema := meta.CurrentSchema()
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version := meta.Version()
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snapshotID := currentSnap.SnapshotID
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// Compute the snapshot ID for the commit up front so all manifest entries
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// reference the same snapshot that will actually be committed.
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newSnapID := time.Now().UnixMilli()
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// Process each bin: read source Parquet files, merge, write output
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var newManifestEntries []iceberg.ManifestEntry
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var deletedManifestEntries []iceberg.ManifestEntry
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totalMerged := 0
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metaDir := path.Join(s3tables.TablesPath, bucketName, tablePath, "metadata")
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dataDir := path.Join(s3tables.TablesPath, bucketName, tablePath, "data")
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// Track written artifacts so we can clean them up if the commit fails.
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type artifact struct {
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dir, fileName string
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}
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var writtenArtifacts []artifact
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committed := false
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defer func() {
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if committed || len(writtenArtifacts) == 0 {
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return
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}
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// Use a detached context so cleanup completes even if ctx was canceled.
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cleanupCtx, cancel := context.WithTimeout(context.Background(), 30*time.Second)
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defer cancel()
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for _, a := range writtenArtifacts {
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if err := deleteFilerFile(cleanupCtx, filerClient, a.dir, a.fileName); err != nil {
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glog.Warningf("iceberg compact: failed to clean up artifact %s/%s: %v", a.dir, a.fileName, err)
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}
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}
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}()
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for binIdx, bin := range bins {
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select {
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case <-ctx.Done():
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return "", ctx.Err()
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default:
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}
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mergedFileName := fmt.Sprintf("compact-%d-%d-%d.parquet", snapshotID, newSnapID, binIdx)
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mergedFilePath := path.Join("data", mergedFileName)
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mergedData, recordCount, err := mergeParquetFiles(ctx, filerClient, bucketName, tablePath, bin.Entries)
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if err != nil {
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glog.Warningf("iceberg compact: failed to merge bin %d (%d files): %v", binIdx, len(bin.Entries), err)
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continue
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}
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// Write merged file to filer
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if err := ensureFilerDir(ctx, filerClient, dataDir); err != nil {
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return "", fmt.Errorf("ensure data dir: %w", err)
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}
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if err := saveFilerFile(ctx, filerClient, dataDir, mergedFileName, mergedData); err != nil {
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return "", fmt.Errorf("save merged file: %w", err)
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}
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// Create new DataFile entry for the merged file
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dfBuilder, err := iceberg.NewDataFileBuilder(
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spec,
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iceberg.EntryContentData,
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mergedFilePath,
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iceberg.ParquetFile,
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bin.Partition,
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nil, nil,
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recordCount,
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int64(len(mergedData)),
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)
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if err != nil {
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glog.Warningf("iceberg compact: failed to build data file entry for bin %d: %v", binIdx, err)
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// Clean up the written file
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_ = deleteFilerFile(ctx, filerClient, dataDir, mergedFileName)
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continue
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}
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writtenArtifacts = append(writtenArtifacts, artifact{dir: dataDir, fileName: mergedFileName})
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newEntry := iceberg.NewManifestEntry(
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iceberg.EntryStatusADDED,
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&newSnapID,
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nil, nil,
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dfBuilder.Build(),
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)
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newManifestEntries = append(newManifestEntries, newEntry)
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// Mark original entries as deleted
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for _, entry := range bin.Entries {
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delEntry := iceberg.NewManifestEntry(
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iceberg.EntryStatusDELETED,
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&newSnapID,
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nil, nil,
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entry.DataFile(),
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)
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deletedManifestEntries = append(deletedManifestEntries, delEntry)
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}
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totalMerged += len(bin.Entries)
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}
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if len(newManifestEntries) == 0 {
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return "no bins successfully compacted", nil
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}
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// Build entries for the new manifest:
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// - ADDED entries for merged files
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// - DELETED entries for original files
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// - EXISTING entries for files that weren't compacted
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compactedPaths := make(map[string]struct{})
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for _, entry := range deletedManifestEntries {
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compactedPaths[entry.DataFile().FilePath()] = struct{}{}
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}
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var manifestEntries []iceberg.ManifestEntry
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manifestEntries = append(manifestEntries, newManifestEntries...)
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manifestEntries = append(manifestEntries, deletedManifestEntries...)
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// Keep existing entries that weren't compacted
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for _, entry := range allEntries {
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if _, compacted := compactedPaths[entry.DataFile().FilePath()]; !compacted {
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existingEntry := iceberg.NewManifestEntry(
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iceberg.EntryStatusEXISTING,
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func() *int64 { id := entry.SnapshotID(); return &id }(),
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nil, nil,
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entry.DataFile(),
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)
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manifestEntries = append(manifestEntries, existingEntry)
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}
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}
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// Write new manifest
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var manifestBuf bytes.Buffer
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manifestFileName := fmt.Sprintf("compact-%d.avro", newSnapID)
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newManifest, err := iceberg.WriteManifest(
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path.Join("metadata", manifestFileName),
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&manifestBuf,
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version,
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spec,
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schema,
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newSnapID,
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manifestEntries,
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)
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if err != nil {
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return "", fmt.Errorf("write compact manifest: %w", err)
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}
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if err := saveFilerFile(ctx, filerClient, metaDir, manifestFileName, manifestBuf.Bytes()); err != nil {
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return "", fmt.Errorf("save compact manifest: %w", err)
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}
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writtenArtifacts = append(writtenArtifacts, artifact{dir: metaDir, fileName: manifestFileName})
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// Build manifest list with only the new manifest (the early abort at the
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// top of this function guarantees no delete manifests are present).
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allManifests := []iceberg.ManifestFile{newManifest}
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// Write new manifest list
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var manifestListBuf bytes.Buffer
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seqNum := currentSnap.SequenceNumber + 1
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err = iceberg.WriteManifestList(version, &manifestListBuf, newSnapID, &snapshotID, &seqNum, 0, allManifests)
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if err != nil {
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return "", fmt.Errorf("write compact manifest list: %w", err)
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}
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manifestListFileName := fmt.Sprintf("snap-%d.avro", newSnapID)
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if err := saveFilerFile(ctx, filerClient, metaDir, manifestListFileName, manifestListBuf.Bytes()); err != nil {
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return "", fmt.Errorf("save compact manifest list: %w", err)
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}
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writtenArtifacts = append(writtenArtifacts, artifact{dir: metaDir, fileName: manifestListFileName})
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// Commit: add new snapshot and update main branch ref
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manifestListLocation := path.Join("metadata", manifestListFileName)
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err = h.commitWithRetry(ctx, filerClient, bucketName, tablePath, metadataFileName, config, func(currentMeta table.Metadata, builder *table.MetadataBuilder) error {
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// Guard: verify table head hasn't advanced since we planned.
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cs := currentMeta.CurrentSnapshot()
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if cs == nil || cs.SnapshotID != snapshotID {
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return errStalePlan
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}
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newSnapshot := &table.Snapshot{
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SnapshotID: newSnapID,
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ParentSnapshotID: &snapshotID,
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SequenceNumber: seqNum,
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TimestampMs: newSnapID,
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ManifestList: manifestListLocation,
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Summary: &table.Summary{
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Operation: table.OpReplace,
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Properties: map[string]string{
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"maintenance": "compact_data_files",
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"merged-files": fmt.Sprintf("%d", totalMerged),
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"new-files": fmt.Sprintf("%d", len(newManifestEntries)),
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"compaction-bins": fmt.Sprintf("%d", len(bins)),
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},
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},
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SchemaID: func() *int {
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id := schema.ID
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return &id
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}(),
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}
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if err := builder.AddSnapshot(newSnapshot); err != nil {
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return err
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}
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return builder.SetSnapshotRef(table.MainBranch, newSnapID, table.BranchRef)
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})
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if err != nil {
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return "", fmt.Errorf("commit compaction: %w", err)
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}
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committed = true
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return fmt.Sprintf("compacted %d files into %d (across %d bins)", totalMerged, len(newManifestEntries), len(bins)), nil
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}
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// buildCompactionBins groups small data files by partition for bin-packing.
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// A file is "small" if it's below targetSize. A bin must have at least
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// minFiles entries to be worth compacting.
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func buildCompactionBins(entries []iceberg.ManifestEntry, targetSize int64, minFiles int) []compactionBin {
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if minFiles < 2 {
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minFiles = 2
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}
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// Group entries by partition key
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groups := make(map[string]*compactionBin)
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for _, entry := range entries {
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df := entry.DataFile()
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if df.FileFormat() != iceberg.ParquetFile {
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continue
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}
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if df.FileSizeBytes() >= targetSize {
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continue
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}
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partKey := partitionKey(df.Partition())
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bin, ok := groups[partKey]
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if !ok {
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bin = &compactionBin{
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PartitionKey: partKey,
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Partition: df.Partition(),
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}
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groups[partKey] = bin
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}
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bin.Entries = append(bin.Entries, entry)
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bin.TotalSize += df.FileSizeBytes()
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}
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// Filter to bins with enough files, splitting oversized bins
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var result []compactionBin
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for _, bin := range groups {
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if len(bin.Entries) < minFiles {
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continue
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}
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if bin.TotalSize <= targetSize {
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result = append(result, *bin)
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} else {
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result = append(result, splitOversizedBin(*bin, targetSize, minFiles)...)
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}
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}
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// Sort by partition key for deterministic order
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sort.Slice(result, func(i, j int) bool {
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return result[i].PartitionKey < result[j].PartitionKey
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})
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return result
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}
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// splitOversizedBin splits a bin whose total size exceeds targetSize into
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// sub-bins that each stay under targetSize while meeting minFiles.
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func splitOversizedBin(bin compactionBin, targetSize int64, minFiles int) []compactionBin {
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var bins []compactionBin
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current := compactionBin{
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PartitionKey: bin.PartitionKey,
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Partition: bin.Partition,
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}
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for _, entry := range bin.Entries {
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if current.TotalSize > 0 && current.TotalSize+entry.DataFile().FileSizeBytes() > targetSize && len(current.Entries) >= minFiles {
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bins = append(bins, current)
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current = compactionBin{
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PartitionKey: bin.PartitionKey,
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Partition: bin.Partition,
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}
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}
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current.Entries = append(current.Entries, entry)
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current.TotalSize += entry.DataFile().FileSizeBytes()
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}
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if len(current.Entries) >= minFiles {
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bins = append(bins, current)
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}
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return bins
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}
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// partitionKey creates a string key from a partition map for grouping.
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// Values are JSON-encoded to avoid ambiguity when values contain commas or '='.
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func partitionKey(partition map[int]any) string {
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if len(partition) == 0 {
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return "__unpartitioned__"
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}
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// Sort field IDs for deterministic key
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ids := make([]int, 0, len(partition))
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for id := range partition {
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ids = append(ids, id)
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}
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sort.Ints(ids)
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var parts []string
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for _, id := range ids {
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v, err := json.Marshal(partition[id])
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if err != nil {
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v = []byte(fmt.Sprintf("%x", fmt.Sprintf("%v", partition[id])))
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}
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parts = append(parts, fmt.Sprintf("%d=%s", id, v))
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}
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return strings.Join(parts, "\x00")
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}
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// mergeParquetFiles reads multiple small Parquet files and merges them into
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// a single Parquet file. It reads rows from each source and writes them to
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// the output using the schema from the first file.
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//
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// Files are loaded into memory (appropriate for compacting small files).
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func mergeParquetFiles(
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ctx context.Context,
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filerClient filer_pb.SeaweedFilerClient,
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bucketName, tablePath string,
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entries []iceberg.ManifestEntry,
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) ([]byte, int64, error) {
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if len(entries) == 0 {
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return nil, 0, fmt.Errorf("no entries to merge")
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}
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// Read all source files and create parquet readers
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type sourceFile struct {
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reader *parquet.Reader
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data []byte
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}
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var sources []sourceFile
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defer func() {
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for _, src := range sources {
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if src.reader != nil {
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src.reader.Close()
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}
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}
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}()
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var parquetSchema *parquet.Schema
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for _, entry := range entries {
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select {
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case <-ctx.Done():
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return nil, 0, ctx.Err()
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default:
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}
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data, err := loadFileByIcebergPath(ctx, filerClient, bucketName, tablePath, entry.DataFile().FilePath())
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if err != nil {
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return nil, 0, fmt.Errorf("read parquet file %s: %w", entry.DataFile().FilePath(), err)
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}
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reader := parquet.NewReader(bytes.NewReader(data))
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readerSchema := reader.Schema()
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if parquetSchema == nil {
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parquetSchema = readerSchema
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} else if !schemasEqual(parquetSchema, readerSchema) {
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return nil, 0, fmt.Errorf("schema mismatch in %s: cannot merge files with different schemas", entry.DataFile().FilePath())
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}
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sources = append(sources, sourceFile{reader: reader, data: data})
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}
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if parquetSchema == nil {
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return nil, 0, fmt.Errorf("no parquet schema found")
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}
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// Write merged output
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var outputBuf bytes.Buffer
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writer := parquet.NewWriter(&outputBuf, parquetSchema)
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var totalRows int64
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rows := make([]parquet.Row, 256)
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for _, src := range sources {
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for {
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n, err := src.reader.ReadRows(rows)
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if n > 0 {
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if _, writeErr := writer.WriteRows(rows[:n]); writeErr != nil {
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writer.Close()
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return nil, 0, fmt.Errorf("write rows: %w", writeErr)
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}
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totalRows += int64(n)
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}
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if err != nil {
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if err == io.EOF {
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break
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}
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writer.Close()
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return nil, 0, fmt.Errorf("read rows: %w", err)
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}
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}
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}
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if err := writer.Close(); err != nil {
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return nil, 0, fmt.Errorf("close writer: %w", err)
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}
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return outputBuf.Bytes(), totalRows, nil
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}
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// schemasEqual compares two parquet schemas structurally.
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func schemasEqual(a, b *parquet.Schema) bool {
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if a == b {
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return true
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}
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if a == nil || b == nil {
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return false
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}
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return parquet.EqualNodes(a, b)
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}
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// ensureFilerDir ensures a directory exists in the filer.
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func ensureFilerDir(ctx context.Context, client filer_pb.SeaweedFilerClient, dirPath string) error {
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|
parentDir := path.Dir(dirPath)
|
|
dirName := path.Base(dirPath)
|
|
|
|
_, err := filer_pb.LookupEntry(ctx, client, &filer_pb.LookupDirectoryEntryRequest{
|
|
Directory: parentDir,
|
|
Name: dirName,
|
|
})
|
|
if err == nil {
|
|
return nil // already exists
|
|
}
|
|
if !errors.Is(err, filer_pb.ErrNotFound) && status.Code(err) != codes.NotFound {
|
|
return fmt.Errorf("lookup dir %s: %w", dirPath, err)
|
|
}
|
|
|
|
resp, createErr := client.CreateEntry(ctx, &filer_pb.CreateEntryRequest{
|
|
Directory: parentDir,
|
|
Entry: &filer_pb.Entry{
|
|
Name: dirName,
|
|
IsDirectory: true,
|
|
Attributes: &filer_pb.FuseAttributes{
|
|
Mtime: time.Now().Unix(),
|
|
Crtime: time.Now().Unix(),
|
|
FileMode: uint32(0755),
|
|
},
|
|
},
|
|
})
|
|
if createErr != nil {
|
|
return createErr
|
|
}
|
|
if resp.Error != "" && !strings.Contains(resp.Error, "exist") {
|
|
return fmt.Errorf("create dir %s: %s", dirPath, resp.Error)
|
|
}
|
|
return nil
|
|
}
|