diff --git a/weed/filer/filechunk_manifest.go b/weed/filer/filechunk_manifest.go
index 29860c27a..d036cfd24 100644
--- a/weed/filer/filechunk_manifest.go
+++ b/weed/filer/filechunk_manifest.go
@@ -68,12 +68,12 @@ func ResolveChunkManifest(lookupFileIdFn wdclient.LookupFileIdFunctionType, chun
 
 		manifestChunks = append(manifestChunks, chunk)
 		// recursive
-		dchunks, mchunks, subErr := ResolveChunkManifest(lookupFileIdFn, resolvedChunks, startOffset, stopOffset)
+		dataChunks, manifestChunks, subErr := ResolveChunkManifest(lookupFileIdFn, resolvedChunks, startOffset, stopOffset)
 		if subErr != nil {
 			return chunks, nil, subErr
 		}
-		dataChunks = append(dataChunks, dchunks...)
-		manifestChunks = append(manifestChunks, mchunks...)
+		dataChunks = append(dataChunks, dataChunks...)
+		manifestChunks = append(manifestChunks, manifestChunks...)
 	}
 	return
 }
diff --git a/weed/filer/filer_deletion.go b/weed/filer/filer_deletion.go
index e0191d7f1..e73f94151 100644
--- a/weed/filer/filer_deletion.go
+++ b/weed/filer/filer_deletion.go
@@ -1,6 +1,7 @@
 package filer
 
 import (
+	"math"
 	"strings"
 	"time"
 
@@ -129,6 +130,12 @@ func (f *Filer) DeleteChunks(chunks []*filer_pb.FileChunk) {
 	}
 }
 
+func (f *Filer) DeleteChunksNotRecursive(chunks []*filer_pb.FileChunk) {
+	for _, chunk := range chunks {
+		f.fileIdDeletionQueue.EnQueue(chunk.GetFileIdString())
+	}
+}
+
 func (f *Filer) deleteChunksIfNotNew(oldEntry, newEntry *Entry) {
 
 	if oldEntry == nil {
@@ -141,14 +148,36 @@ func (f *Filer) deleteChunksIfNotNew(oldEntry, newEntry *Entry) {
 
 	var toDelete []*filer_pb.FileChunk
 	newChunkIds := make(map[string]bool)
-	for _, newChunk := range newEntry.Chunks {
+	newDataChunks, newManifestChunks, err := ResolveChunkManifest(f.MasterClient.GetLookupFileIdFunction(),
+		newEntry.Chunks, 0, math.MaxInt64)
+	if err != nil {
+		glog.Errorf("Failed to resolve new entry chunks when delete old entry chunks. new: %s, old: %s",
+			newEntry.Chunks, oldEntry.Chunks)
+		return
+	}
+	for _, newChunk := range newDataChunks {
+		newChunkIds[newChunk.GetFileIdString()] = true
+	}
+	for _, newChunk := range newManifestChunks {
 		newChunkIds[newChunk.GetFileIdString()] = true
 	}
 
-	for _, oldChunk := range oldEntry.Chunks {
+	oldDataChunks, oldManifestChunks, err := ResolveChunkManifest(f.MasterClient.GetLookupFileIdFunction(),
+		oldEntry.Chunks, 0, math.MaxInt64)
+	if err != nil {
+		glog.Errorf("Failed to resolve old entry chunks when delete old entry chunks. new: %s, old: %s",
+			newEntry.Chunks, oldEntry.Chunks)
+		return
+	}
+	for _, oldChunk := range oldDataChunks {
+		if _, found := newChunkIds[oldChunk.GetFileIdString()]; !found {
+			toDelete = append(toDelete, oldChunk)
+		}
+	}
+	for _, oldChunk := range oldManifestChunks {
 		if _, found := newChunkIds[oldChunk.GetFileIdString()]; !found {
 			toDelete = append(toDelete, oldChunk)
 		}
 	}
-	f.DeleteChunks(toDelete)
+	f.DeleteChunksNotRecursive(toDelete)
 }
diff --git a/weed/shell/command_volume_fsck.go b/weed/shell/command_volume_fsck.go
index 28f2d6753..1b3d7bf0d 100644
--- a/weed/shell/command_volume_fsck.go
+++ b/weed/shell/command_volume_fsck.go
@@ -153,12 +153,12 @@ func (c *commandVolumeFsck) collectFilerFileIdAndPaths(volumeIdToServer map[uint
 		if verbose && entry.Entry.IsDirectory {
 			fmt.Fprintf(writer, "checking directory %s\n", util.NewFullPath(entry.Dir, entry.Entry.Name))
 		}
-		dChunks, mChunks, resolveErr := filer.ResolveChunkManifest(filer.LookupFn(c.env), entry.Entry.Chunks, 0, math.MaxInt64)
+		dataChunks, manifestChunks, resolveErr := filer.ResolveChunkManifest(filer.LookupFn(c.env), entry.Entry.Chunks, 0, math.MaxInt64)
 		if resolveErr != nil {
 			return nil
 		}
-		dChunks = append(dChunks, mChunks...)
-		for _, chunk := range dChunks {
+		dataChunks = append(dataChunks, manifestChunks...)
+		for _, chunk := range dataChunks {
 			outputChan <- &Item{
 				vid:     chunk.Fid.VolumeId,
 				fileKey: chunk.Fid.FileKey,
@@ -332,15 +332,15 @@ func (c *commandVolumeFsck) collectFilerFileIds(volumeIdToServer map[uint32]VInf
 		fileKey uint64
 	}
 	return doTraverseBfsAndSaving(c.env, nil, "/", false, func(entry *filer_pb.FullEntry, outputChan chan interface{}) (err error) {
-		dChunks, mChunks, resolveErr := filer.ResolveChunkManifest(filer.LookupFn(c.env), entry.Entry.Chunks, 0, math.MaxInt64)
+		dataChunks, manifestChunks, resolveErr := filer.ResolveChunkManifest(filer.LookupFn(c.env), entry.Entry.Chunks, 0, math.MaxInt64)
 		if resolveErr != nil {
 			if verbose {
 				fmt.Fprintf(writer, "resolving manifest chunks in %s: %v\n", util.NewFullPath(entry.Dir, entry.Entry.Name), resolveErr)
 			}
 			return nil
 		}
-		dChunks = append(dChunks, mChunks...)
-		for _, chunk := range dChunks {
+		dataChunks = append(dataChunks, manifestChunks...)
+		for _, chunk := range dataChunks {
 			outputChan <- &Item{
 				vid:     chunk.Fid.VolumeId,
 				fileKey: chunk.Fid.FileKey,