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package shell
import ( "bufio" "context" "flag" "fmt" "github.com/seaweedfs/seaweedfs/weed/filer" "github.com/seaweedfs/seaweedfs/weed/operation" "github.com/seaweedfs/seaweedfs/weed/pb" "github.com/seaweedfs/seaweedfs/weed/pb/filer_pb" "github.com/seaweedfs/seaweedfs/weed/pb/master_pb" "github.com/seaweedfs/seaweedfs/weed/pb/volume_server_pb" "github.com/seaweedfs/seaweedfs/weed/storage/needle" "github.com/seaweedfs/seaweedfs/weed/storage/needle_map" "github.com/seaweedfs/seaweedfs/weed/storage/types" "github.com/seaweedfs/seaweedfs/weed/util" "io" "io/ioutil" "math" "net/http" "net/url" "os" "path" "path/filepath" "strings" "sync" "time" )
func init() { Commands = append(Commands, &commandVolumeFsck{}) }
type commandVolumeFsck struct { env *CommandEnv forcePurging *bool }
func (c *commandVolumeFsck) Name() string { return "volume.fsck" }
func (c *commandVolumeFsck) Help() string { return `check all volumes to find entries not used by the filer
Important assumption!!! the system is all used by one filer.
This command works this way: 1. collect all file ids from all volumes, as set A 2. collect all file ids from the filer, as set B 3. find out the set A subtract B
If -findMissingChunksInFiler is enabled, this works in a reverse way: 1. collect all file ids from all volumes, as set A 2. collect all file ids from the filer, as set B 3. find out the set B subtract A
` }
func (c *commandVolumeFsck) Do(args []string, commandEnv *CommandEnv, writer io.Writer) (err error) {
fsckCommand := flag.NewFlagSet(c.Name(), flag.ContinueOnError) verbose := fsckCommand.Bool("v", false, "verbose mode") findMissingChunksInFiler := fsckCommand.Bool("findMissingChunksInFiler", false, "see \"help volume.fsck\"") findMissingChunksInFilerPath := fsckCommand.String("findMissingChunksInFilerPath", "/", "used together with findMissingChunksInFiler") findMissingChunksInVolumeId := fsckCommand.Int("findMissingChunksInVolumeId", 0, "used together with findMissingChunksInFiler") applyPurging := fsckCommand.Bool("reallyDeleteFromVolume", false, "<expert only!> after detection, delete missing data from volumes / delete missing file entries from filer. Currently this only works with default filerGroup.") c.forcePurging = fsckCommand.Bool("forcePurging", false, "delete missing data from volumes in one replica used together with applyPurging") purgeAbsent := fsckCommand.Bool("reallyDeleteFilerEntries", false, "<expert only!> delete missing file entries from filer if the corresponding volume is missing for any reason, please ensure all still existing/expected volumes are connected! used together with findMissingChunksInFiler") tempPath := fsckCommand.String("tempPath", path.Join(os.TempDir()), "path for temporary idx files")
if err = fsckCommand.Parse(args); err != nil { return nil }
if err = commandEnv.confirmIsLocked(args); err != nil { return }
c.env = commandEnv
// create a temp folder
tempFolder, err := os.MkdirTemp(*tempPath, "sw_fsck") if err != nil { return fmt.Errorf("failed to create temp folder: %v", err) } if *verbose { fmt.Fprintf(writer, "working directory: %s\n", tempFolder) } defer os.RemoveAll(tempFolder)
// collect all volume id locations
dataNodeVolumeIdToVInfo, err := c.collectVolumeIds(commandEnv, *verbose, writer) if err != nil { return fmt.Errorf("failed to collect all volume locations: %v", err) }
isBucketsPath := false var fillerBucketsPath string if *findMissingChunksInFiler && *findMissingChunksInFilerPath != "/" { fillerBucketsPath, err = readFilerBucketsPath(commandEnv) if err != nil { return fmt.Errorf("read filer buckets path: %v", err) } if strings.HasPrefix(*findMissingChunksInFilerPath, fillerBucketsPath) { isBucketsPath = true } } if err != nil { return fmt.Errorf("read filer buckets path: %v", err) }
collectMtime := time.Now().Unix() // collect each volume file ids
for dataNodeId, volumeIdToVInfo := range dataNodeVolumeIdToVInfo { for volumeId, vinfo := range volumeIdToVInfo { if *findMissingChunksInVolumeId > 0 && uint32(*findMissingChunksInVolumeId) != volumeId { delete(volumeIdToVInfo, volumeId) continue } if isBucketsPath && !strings.HasPrefix(*findMissingChunksInFilerPath, fillerBucketsPath+"/"+vinfo.collection) { delete(volumeIdToVInfo, volumeId) continue } err = c.collectOneVolumeFileIds(tempFolder, dataNodeId, volumeId, vinfo, *verbose, writer) if err != nil { return fmt.Errorf("failed to collect file ids from volume %d on %s: %v", volumeId, vinfo.server, err) } } }
if *findMissingChunksInFiler { // collect all filer file ids and paths
if err = c.collectFilerFileIdAndPaths(dataNodeVolumeIdToVInfo, tempFolder, writer, *findMissingChunksInFilerPath, *verbose, *purgeAbsent, collectMtime); err != nil { return fmt.Errorf("collectFilerFileIdAndPaths: %v", err) } for dataNodeId, volumeIdToVInfo := range dataNodeVolumeIdToVInfo { // for each volume, check filer file ids
if err = c.findFilerChunksMissingInVolumeServers(volumeIdToVInfo, tempFolder, dataNodeId, writer, *verbose, *applyPurging); err != nil { return fmt.Errorf("findFilerChunksMissingInVolumeServers: %v", err) } } } else { // collect all filer file ids
if err = c.collectFilerFileIds(dataNodeVolumeIdToVInfo, tempFolder, writer, *verbose); err != nil { return fmt.Errorf("failed to collect file ids from filer: %v", err) } // volume file ids subtract filer file ids
if err = c.findExtraChunksInVolumeServers(dataNodeVolumeIdToVInfo, tempFolder, writer, *verbose, *applyPurging); err != nil { return fmt.Errorf("findExtraChunksInVolumeServers: %v", err) } }
return nil }
func (c *commandVolumeFsck) collectFilerFileIdAndPaths(dataNodeVolumeIdToVInfo map[string]map[uint32]VInfo, tempFolder string, writer io.Writer, filerPath string, verbose bool, purgeAbsent bool, collectMtime int64) error {
if verbose { fmt.Fprintf(writer, "checking each file from filer ...\n") }
files := make(map[uint32]*os.File) for _, volumeIdToServer := range dataNodeVolumeIdToVInfo { for vid := range volumeIdToServer { if _, ok := files[vid]; ok { continue } dst, openErr := os.OpenFile(getFilerFileIdFile(tempFolder, vid), os.O_WRONLY|os.O_CREATE|os.O_TRUNC, 0644) if openErr != nil { return fmt.Errorf("failed to create file %s: %v", getFilerFileIdFile(tempFolder, vid), openErr) } files[vid] = dst } } defer func() { for _, f := range files { f.Close() } }()
type Item struct { vid uint32 fileKey uint64 cookie uint32 path util.FullPath } return doTraverseBfsAndSaving(c.env, nil, filerPath, false, func(entry *filer_pb.FullEntry, outputChan chan interface{}) (err error) { if verbose && entry.Entry.IsDirectory { fmt.Fprintf(writer, "checking directory %s\n", util.NewFullPath(entry.Dir, entry.Entry.Name)) } dataChunks, manifestChunks, resolveErr := filer.ResolveChunkManifest(filer.LookupFn(c.env), entry.Entry.Chunks, 0, math.MaxInt64) if resolveErr != nil { return nil } dataChunks = append(dataChunks, manifestChunks...) for _, chunk := range dataChunks { if chunk.Mtime > collectMtime { continue } outputChan <- &Item{ vid: chunk.Fid.VolumeId, fileKey: chunk.Fid.FileKey, cookie: chunk.Fid.Cookie, path: util.NewFullPath(entry.Dir, entry.Entry.Name), } } return nil }, func(outputChan chan interface{}) { buffer := make([]byte, 16) for item := range outputChan { i := item.(*Item) if f, ok := files[i.vid]; ok { util.Uint64toBytes(buffer, i.fileKey) util.Uint32toBytes(buffer[8:], i.cookie) util.Uint32toBytes(buffer[12:], uint32(len(i.path))) f.Write(buffer) f.Write([]byte(i.path)) // fmt.Fprintf(writer, "%d,%x%08x %d %s\n", i.vid, i.fileKey, i.cookie, len(i.path), i.path)
} else { fmt.Fprintf(writer, "%d,%x%08x %s volume not found\n", i.vid, i.fileKey, i.cookie, i.path) if purgeAbsent { fmt.Printf("deleting path %s after volume not found", i.path) c.httpDelete(i.path, verbose) } } } })
}
func (c *commandVolumeFsck) findFilerChunksMissingInVolumeServers(volumeIdToVInfo map[uint32]VInfo, tempFolder string, dataNodeId string, writer io.Writer, verbose bool, applyPurging bool) error {
for volumeId, vinfo := range volumeIdToVInfo { checkErr := c.oneVolumeFileIdsCheckOneVolume(tempFolder, dataNodeId, volumeId, writer, verbose, applyPurging) if checkErr != nil { return fmt.Errorf("failed to collect file ids from volume %d on %s: %v", volumeId, vinfo.server, checkErr) } } return nil }
func (c *commandVolumeFsck) findExtraChunksInVolumeServers(dataNodeVolumeIdToVInfo map[string]map[uint32]VInfo, tempFolder string, writer io.Writer, verbose bool, applyPurging bool) error {
var totalInUseCount, totalOrphanChunkCount, totalOrphanDataSize uint64 volumeIdOrphanFileIds := make(map[uint32]map[string]bool) isSeveralReplicas := make(map[uint32]bool) isEcVolumeReplicas := make(map[uint32]bool) isReadOnlyReplicas := make(map[uint32]bool) serverReplicas := make(map[uint32][]pb.ServerAddress) for dataNodeId, volumeIdToVInfo := range dataNodeVolumeIdToVInfo { for volumeId, vinfo := range volumeIdToVInfo { inUseCount, orphanFileIds, orphanDataSize, checkErr := c.oneVolumeFileIdsSubtractFilerFileIds(tempFolder, dataNodeId, volumeId, writer, verbose) if checkErr != nil { return fmt.Errorf("failed to collect file ids from volume %d on %s: %v", volumeId, vinfo.server, checkErr) } isSeveralReplicas[volumeId] = false if _, found := volumeIdOrphanFileIds[volumeId]; !found { volumeIdOrphanFileIds[volumeId] = make(map[string]bool) } else { isSeveralReplicas[volumeId] = true } for _, fid := range orphanFileIds { if isSeveralReplicas[volumeId] { if _, found := volumeIdOrphanFileIds[volumeId][fid]; !found { continue } } volumeIdOrphanFileIds[volumeId][fid] = isSeveralReplicas[volumeId] }
totalInUseCount += inUseCount totalOrphanChunkCount += uint64(len(orphanFileIds)) totalOrphanDataSize += orphanDataSize
if verbose { for _, fid := range orphanFileIds { fmt.Fprintf(writer, "%s\n", fid) } } isEcVolumeReplicas[volumeId] = vinfo.isEcVolume if isReadOnly, found := isReadOnlyReplicas[volumeId]; !(found && isReadOnly) { isReadOnlyReplicas[volumeId] = vinfo.isReadOnly } serverReplicas[volumeId] = append(serverReplicas[volumeId], vinfo.server) }
for volumeId, orphanReplicaFileIds := range volumeIdOrphanFileIds { if !(applyPurging && len(orphanReplicaFileIds) > 0) { continue } orphanFileIds := []string{} for fid, foundInAllReplicas := range orphanReplicaFileIds { if !isSeveralReplicas[volumeId] || *c.forcePurging || (isSeveralReplicas[volumeId] && foundInAllReplicas) { orphanFileIds = append(orphanFileIds, fid) } } if !(len(orphanFileIds) > 0) { continue } if verbose { fmt.Fprintf(writer, "purging process for volume %d.\n", volumeId) }
if isEcVolumeReplicas[volumeId] { fmt.Fprintf(writer, "skip purging for Erasure Coded volume %d.\n", volumeId) continue } for _, server := range serverReplicas[volumeId] { needleVID := needle.VolumeId(volumeId)
if isReadOnlyReplicas[volumeId] { err := markVolumeWritable(c.env.option.GrpcDialOption, needleVID, server, true) if err != nil { return fmt.Errorf("mark volume %d read/write: %v", volumeId, err) }
fmt.Fprintf(writer, "temporarily marked %d on server %v writable for forced purge\n", volumeId, server) defer markVolumeWritable(c.env.option.GrpcDialOption, needleVID, server, false)
fmt.Fprintf(writer, "marked %d on server %v writable for forced purge\n", volumeId, server) } if verbose { fmt.Fprintf(writer, "purging files from volume %d\n", volumeId) }
if err := c.purgeFileIdsForOneVolume(volumeId, orphanFileIds, writer); err != nil { return fmt.Errorf("purging volume %d: %v", volumeId, err) } } } }
if !applyPurging { pct := float64(totalOrphanChunkCount*100) / (float64(totalOrphanChunkCount + totalInUseCount)) fmt.Fprintf(writer, "\nTotal\t\tentries:%d\torphan:%d\t%.2f%%\t%dB\n", totalOrphanChunkCount+totalInUseCount, totalOrphanChunkCount, pct, totalOrphanDataSize)
fmt.Fprintf(writer, "This could be normal if multiple filers or no filers are used.\n") }
if totalOrphanChunkCount == 0 { fmt.Fprintf(writer, "no orphan data\n") //return nil
}
return nil }
func (c *commandVolumeFsck) collectOneVolumeFileIds(tempFolder string, dataNodeId string, volumeId uint32, vinfo VInfo, verbose bool, writer io.Writer) error {
if verbose { fmt.Fprintf(writer, "collecting volume %d file ids from %s ...\n", volumeId, vinfo.server) }
return operation.WithVolumeServerClient(false, vinfo.server, c.env.option.GrpcDialOption, func(volumeServerClient volume_server_pb.VolumeServerClient) error {
ext := ".idx" if vinfo.isEcVolume { ext = ".ecx" }
copyFileClient, err := volumeServerClient.CopyFile(context.Background(), &volume_server_pb.CopyFileRequest{ VolumeId: volumeId, Ext: ext, CompactionRevision: math.MaxUint32, StopOffset: math.MaxInt64, Collection: vinfo.collection, IsEcVolume: vinfo.isEcVolume, IgnoreSourceFileNotFound: false, }) if err != nil { return fmt.Errorf("failed to start copying volume %d%s: %v", volumeId, ext, err) }
err = writeToFile(copyFileClient, getVolumeFileIdFile(tempFolder, dataNodeId, volumeId)) if err != nil { return fmt.Errorf("failed to copy %d%s from %s: %v", volumeId, ext, vinfo.server, err) }
return nil
})
}
func (c *commandVolumeFsck) collectFilerFileIds(dataNodeVolumeIdToVInfo map[string]map[uint32]VInfo, tempFolder string, writer io.Writer, verbose bool) error {
if verbose { fmt.Fprintf(writer, "collecting file ids from filer ...\n") }
files := make(map[uint32]*os.File) for _, volumeIdToServer := range dataNodeVolumeIdToVInfo { for vid := range volumeIdToServer { dst, openErr := os.OpenFile(getFilerFileIdFile(tempFolder, vid), os.O_WRONLY|os.O_CREATE|os.O_TRUNC, 0644) if openErr != nil { return fmt.Errorf("failed to create file %s: %v", getFilerFileIdFile(tempFolder, vid), openErr) } files[vid] = dst } } defer func() { for _, f := range files { f.Close() } }()
type Item struct { vid uint32 fileKey uint64 } return doTraverseBfsAndSaving(c.env, nil, "/", false, func(entry *filer_pb.FullEntry, outputChan chan interface{}) (err error) { dataChunks, manifestChunks, resolveErr := filer.ResolveChunkManifest(filer.LookupFn(c.env), entry.Entry.Chunks, 0, math.MaxInt64) if resolveErr != nil { if verbose { fmt.Fprintf(writer, "resolving manifest chunks in %s: %v\n", util.NewFullPath(entry.Dir, entry.Entry.Name), resolveErr) } return nil } dataChunks = append(dataChunks, manifestChunks...) for _, chunk := range dataChunks { outputChan <- &Item{ vid: chunk.Fid.VolumeId, fileKey: chunk.Fid.FileKey, } } return nil }, func(outputChan chan interface{}) { buffer := make([]byte, 8) for item := range outputChan { i := item.(*Item) util.Uint64toBytes(buffer, i.fileKey) files[i.vid].Write(buffer) } }) }
func (c *commandVolumeFsck) oneVolumeFileIdsCheckOneVolume(tempFolder string, dataNodeId string, volumeId uint32, writer io.Writer, verbose bool, applyPurging bool) (err error) {
if verbose { fmt.Fprintf(writer, "find missing file chunks in dataNodeId %s volume %d ...\n", dataNodeId, volumeId) }
db := needle_map.NewMemDb() defer db.Close()
if err = db.LoadFromIdx(getVolumeFileIdFile(tempFolder, dataNodeId, volumeId)); err != nil { return }
file := getFilerFileIdFile(tempFolder, volumeId) fp, err := os.Open(file) if err != nil { return } defer fp.Close()
type Item struct { fileKey uint64 cookie uint32 path util.FullPath }
br := bufio.NewReader(fp) buffer := make([]byte, 16) item := &Item{} var readSize int for { readSize, err = io.ReadFull(br, buffer) if err != nil || readSize != 16 { break }
item.fileKey = util.BytesToUint64(buffer[:8]) item.cookie = util.BytesToUint32(buffer[8:12]) pathSize := util.BytesToUint32(buffer[12:16]) pathBytes := make([]byte, int(pathSize)) n, err := io.ReadFull(br, pathBytes) if err != nil { fmt.Fprintf(writer, "%d,%x%08x in unexpected error: %v\n", volumeId, item.fileKey, item.cookie, err) } if n != int(pathSize) { fmt.Fprintf(writer, "%d,%x%08x %d unexpected file name size %d\n", volumeId, item.fileKey, item.cookie, pathSize, n) } item.path = util.FullPath(string(pathBytes))
needleId := types.NeedleId(item.fileKey) if _, found := db.Get(needleId); !found { fmt.Fprintf(writer, "%s\n", item.path)
if applyPurging { // defining the URL this way automatically escapes complex path names
c.httpDelete(item.path, verbose) } } } return nil }
func (c *commandVolumeFsck) httpDelete(path util.FullPath, verbose bool) { req, err := http.NewRequest(http.MethodDelete, "", nil)
req.URL = &url.URL{ Scheme: "http", Host: c.env.option.FilerAddress.ToHttpAddress(), Path: string(path), } if verbose { fmt.Printf("full HTTP delete request to be sent: %v\n", req) } if err != nil { fmt.Errorf("HTTP delete request error: %v\n", err) }
client := &http.Client{}
resp, err := client.Do(req) if err != nil { fmt.Errorf("DELETE fetch error: %v\n", err) } defer resp.Body.Close()
_, err = ioutil.ReadAll(resp.Body) if err != nil { fmt.Errorf("DELETE response error: %v\n", err) }
if verbose { fmt.Println("delete response Status : ", resp.Status) fmt.Println("delete response Headers : ", resp.Header) } }
func (c *commandVolumeFsck) oneVolumeFileIdsSubtractFilerFileIds(tempFolder string, dataNodeId string, volumeId uint32, writer io.Writer, verbose bool) (inUseCount uint64, orphanFileIds []string, orphanDataSize uint64, err error) {
db := needle_map.NewMemDb() defer db.Close()
if err = db.LoadFromIdx(getVolumeFileIdFile(tempFolder, dataNodeId, volumeId)); err != nil { return }
filerFileIdsData, err := os.ReadFile(getFilerFileIdFile(tempFolder, volumeId)) if err != nil { return }
dataLen := len(filerFileIdsData) if dataLen%8 != 0 { return 0, nil, 0, fmt.Errorf("filer data is corrupted") }
for i := 0; i < len(filerFileIdsData); i += 8 { fileKey := util.BytesToUint64(filerFileIdsData[i : i+8]) db.Delete(types.NeedleId(fileKey)) inUseCount++ }
var orphanFileCount uint64 db.AscendingVisit(func(n needle_map.NeedleValue) error { // fmt.Printf("%d,%x\n", volumeId, n.Key)
orphanFileIds = append(orphanFileIds, fmt.Sprintf("%d,%s00000000", volumeId, n.Key.String())) orphanFileCount++ orphanDataSize += uint64(n.Size) return nil })
if orphanFileCount > 0 { pct := float64(orphanFileCount*100) / (float64(orphanFileCount + inUseCount)) fmt.Fprintf(writer, "dataNode:%s\tvolume:%d\tentries:%d\torphan:%d\t%.2f%%\t%dB\n", dataNodeId, volumeId, orphanFileCount+inUseCount, orphanFileCount, pct, orphanDataSize) }
return
}
type VInfo struct { server pb.ServerAddress collection string isEcVolume bool isReadOnly bool }
func (c *commandVolumeFsck) collectVolumeIds(commandEnv *CommandEnv, verbose bool, writer io.Writer) (volumeIdToServer map[string]map[uint32]VInfo, err error) {
if verbose { fmt.Fprintf(writer, "collecting volume id and locations from master ...\n") }
volumeIdToServer = make(map[string]map[uint32]VInfo) // collect topology information
topologyInfo, _, err := collectTopologyInfo(commandEnv, 0) if err != nil { return }
eachDataNode(topologyInfo, func(dc string, rack RackId, t *master_pb.DataNodeInfo) { for _, diskInfo := range t.DiskInfos { dataNodeId := t.GetId() volumeIdToServer[dataNodeId] = make(map[uint32]VInfo) for _, vi := range diskInfo.VolumeInfos { volumeIdToServer[dataNodeId][vi.Id] = VInfo{ server: pb.NewServerAddressFromDataNode(t), collection: vi.Collection, isEcVolume: false, isReadOnly: vi.ReadOnly, } } for _, ecShardInfo := range diskInfo.EcShardInfos { volumeIdToServer[dataNodeId][ecShardInfo.Id] = VInfo{ server: pb.NewServerAddressFromDataNode(t), collection: ecShardInfo.Collection, isEcVolume: true, isReadOnly: true, } } } })
if verbose { fmt.Fprintf(writer, "collected %d volumes and locations.\n", len(volumeIdToServer)) } return }
func (c *commandVolumeFsck) purgeFileIdsForOneVolume(volumeId uint32, fileIds []string, writer io.Writer) (err error) { fmt.Fprintf(writer, "purging orphan data for volume %d...\n", volumeId) locations, found := c.env.MasterClient.GetLocations(volumeId) if !found { return fmt.Errorf("failed to find volume %d locations", volumeId) }
resultChan := make(chan []*volume_server_pb.DeleteResult, len(locations)) var wg sync.WaitGroup for _, location := range locations { wg.Add(1) go func(server pb.ServerAddress, fidList []string) { defer wg.Done()
if deleteResults, deleteErr := operation.DeleteFilesAtOneVolumeServer(server, c.env.option.GrpcDialOption, fidList, false); deleteErr != nil { err = deleteErr } else if deleteResults != nil { resultChan <- deleteResults }
}(location.ServerAddress(), fileIds) } wg.Wait() close(resultChan)
for results := range resultChan { for _, result := range results { if result.Error != "" { fmt.Fprintf(writer, "purge error: %s\n", result.Error) } } }
return }
func getVolumeFileIdFile(tempFolder string, dataNodeid string, vid uint32) string { return filepath.Join(tempFolder, fmt.Sprintf("%s_%d.idx", dataNodeid, vid)) }
func getFilerFileIdFile(tempFolder string, vid uint32) string { return filepath.Join(tempFolder, fmt.Sprintf("%d.fid", vid)) }
func writeToFile(client volume_server_pb.VolumeServer_CopyFileClient, fileName string) error { flags := os.O_WRONLY | os.O_CREATE | os.O_TRUNC dst, err := os.OpenFile(fileName, flags, 0644) if err != nil { return nil } defer dst.Close()
for { resp, receiveErr := client.Recv() if receiveErr == io.EOF { break } if receiveErr != nil { return fmt.Errorf("receiving %s: %v", fileName, receiveErr) } dst.Write(resp.FileContent) } return nil }
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